species:   Rhsol
pid:       PID0459
parent:    Rhi-milR-77
paralog:   
locus:     KB317696.1:795409-795502
matures:   ['GCGGGAUUGCAGUACAAAGGGAGA', 'CCCGUUGUGCUCAUUCUGCUG']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317696.1:795409-795502

0 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

                                  *******************     *********************               
CAGCCGAGUUUGGCUUGACAGUUGCAGCUAUCCCCGUUGUGCUCAUUCUGCUGAUUGGAUGCGGGAUUGCAGUACAAAGGGAGAUCAAAUGGCU
.(((((....)))))..........((((((((((.(((((((((((((((.........)))))).)).))))))).))).))).....))))
------------------------------------------------------------GCGGGAUUGCAGUACAAAGGGAGA---------- l=24 a=0 c
--------------------------------CCCGUUGUGCUCAUUCUGCUG----------------------------------------- l=21 a=0 c*
------------------------------------------------------------GCGGGAUUGCAGUACAAAG--------------- l=19 a=1 ma
------------------------------------UUGUGCUCAUUCUGCUG----------------------------------------- l=17 a=0 ma*

------------------------------------------------------------GCGGGAUUGCAGUACAAAG--------------- l=19 a=1 (ma)
-------------------------------------------------------------CGGGAUUGCAGUACAAAGG-------------- l=19 a=1 

mb-01011
ax-1011101
ku-01
ss-100011111110
fn-011
